NGSANE is a Linux-based, HPC-enabled framework that minimises overhead for set up and processing of new NGS genomics projects yet maintains full flexibility of custom scripting and data provenance. NGSANE process raw sequencing data either on a local cluster or third party Compute Cloud (CSIRO, Amazon). It provides an interactive Web2.0-based presentation layer for quality inspection as well as intuitive tools to interrogate the resulting data.
See NGSANE's GitHub page or spin up an AWS AMI ami-75721c4f (note, this will start a single instance, but running a elastic cloud is recommended - please see GitHub details how to spin that up in AWS).
- Denis Bauer
- Fabian Buske
- Hugh J. French
- Martin A. Smith
In the Press
- Fabian A. Buske, Hugh J. French, Martin A. Smith, Susan J. Clark and Denis C. Bauer NGSANE: A Lightweight Production Informatics Framework for High Throughput Data Analysis Bioinformatics 2014