Harman is a PCA and constrained optimisation based technique that maximises the removal of batch effects from datasets in MAGE gene expression format. The probability of overcorrection (i.e. removing genuine biological signal along with batch noise) is constrained to a fraction which is set by the user.
- November 19 2014: first release of Harman
The latest version of Harman is available for download.
For questions, comments and bug reports please contact Yalchin Oytam.